WormBase Tree Display for Variation: WBVar00026239
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| WBVar00026239 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00026239 | ||||
| Other_name | cbs22768 | |||||
| cb22768 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.541781T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | agagtccacaaggggtcattttatt | tatagtgtaccgtagatggcctaga | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | T | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCGC | AciI | 907 61 32 | ||
| AGCT | AluI | 455 214 145 99 68 19 | ||||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 838 162 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 463 375 162 | ||||
| CCTAGG | AvrII, BlnI, BspA2I, XmaJI | 1000 | ||||
| CTRYAG | BfmI, BstSFI, SfcI, SfeI | 1000 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 272 269 150 140 93 53 12 11 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 703 162 135 | ||||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 682 318 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 407 322 271 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 454 345 114 39 26 22 | ||||
| CCWWGG | BssT1I, Eco130I, EcoT14I, ErhI, StyI | 682 318 | ||||
| RGCY | CviJI, CviTI | 214 140 135 114 99 73 39 32 31 26 22 21 19 16 14 5 | ||||
| WGGCCW | HaeI | 454 345 136 39 26 | ||||
| CAC | HindI | 125 94 94 68 61 54 52 49 49 47 46 42 29 27 25 23 21 18 15 12 10 8 6 5 4 4 3 3 2 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 658 224 101 17 | ||||
| WGTACW | TatI | 924 76 | ||||
| Polymorphic_strain_digest (17) | ||||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024248 | ||||
| Transcript | CBG00943a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00943a.1:c.863-1488A>T | |||||
| Intron_number | 5/9 | |||||
| CBG00943b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00943b.1:c.713-1488A>T | |||||
| Intron_number | 5/9 | |||||
| CBG00943c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00943c.1:c.818-1488A>T | |||||
| Intron_number | 5/9 | |||||
| CBG00943d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00943d.1:c.794-1488A>T | |||||
| Intron_number | 6/9 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
