WormBase Tree Display for Variation: WBVar00057699
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| WBVar00057699 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00057699 | ||||
| Other_name | cbs39469 | |||||
| cb39469 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.557320C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | taaaatatttttgataatatgataaacattttattagttgacaaaatgtt | atatctttattaggagctgagataattgagctccaaacacaaatatcggt | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 310 232 145 69 66 55 43 27 25 22 6 | ||
| TTTAAA | AhaIII, DraI | 633 211 124 27 5 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 468 268 129 68 67 | ||||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 581 419 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 468 268 129 68 67 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 584 378 38 | ||||
| CCWGG | BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI | 581 419 | ||||
| GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 335 302 240 123 | ||||
| RGCY | CviJI, CviTI | 129 116 101 94 70 68 61 60 45 45 45 31 26 23 21 14 14 13 12 6 6 | ||||
| GATATC | Eco32I, EcoRV | 502 498 | ||||
| WGGCCW | HaeI | 425 335 240 | ||||
| GTYRAC | HincII, HindII | 512 335 108 45 | ||||
| CAC | HindI | 353 242 106 98 72 55 31 22 21 | ||||
| GTNNAC | Hpy8I | 512 335 108 45 | ||||
| TTAA | MseI, Tru1I, Tru9I | 268 243 108 90 73 55 52 33 23 15 13 12 11 4 | ||||
| CMGCKG | MspA1I, NspBII | 802 198 | ||||
| TCCNGGA | PfoI | 583 417 | ||||
| CAGCTG | PvuII | 802 198 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 119 110 88 80 66 56 55 55 55 43 34 33 25 25 23 22 20 16 15 14 12 10 9 9 6 | ||||
| Polymorphic_strain_digest (19) | ||||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024248 | ||||
| Transcript | CBG00943d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00943d.1:c.36+511G>A | |||||
| Intron_number | 2/9 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
