WormBase Tree Display for Variation: WBVar00064518
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| WBVar00064518 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00064518 | ||||
| Other_name | cbs41159 | |||||
| cb41159 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.1133841C>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | ttttttgacagaaatagaatacaca | tttctatttcacagttgtcaaaaaa | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | C | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GTMKAC | AccI, FblI, XmiI | 1000 | ||
| TTTAAA | AhaIII, DraI | 1000 | ||||
| GGATCC | BamHI | 771 229 | ||||
| CTAG | BfaI, MaeI, XspI | 337 307 82 80 70 60 46 9 9 | ||||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 465 446 89 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 773 227 | ||||
| CCWGG | BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI | 465 446 89 | ||||
| GCNNGC | BstC8I, Cac8I | 453 416 131 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 419 258 149 131 43 | ||||
| TGCA | CviRI, HpyCH4V | 286 254 253 207 | ||||
| CAC | HindI | 116 101 94 91 79 67 62 59 57 45 40 30 29 23 22 22 20 12 9 9 9 2 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 288 222 219 134 80 26 17 14 | ||||
| GTNNAC | Hpy8I | 927 73 | ||||
| TTAA | MseI, Tru1I, Tru9I | 899 74 27 | ||||
| TCCNGGA | PfoI | 533 467 | ||||
| TTATAA | PsiI | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 269 257 170 72 52 39 33 30 30 25 9 8 6 | ||||
| Polymorphic_strain_digest (17) | ||||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024177 | ||||
| Transcript | CBG00847.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00847.1:c.1881+193C>A | |||||
| Intron_number | 9/13 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
