WormBase Tree Display for Variation: WBVar00065347
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| WBVar00065347 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00065347 | ||||
| Other_name | cbs41325 | |||||
| cb41325 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.642835T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | tttccagatggagcatctacgataa | gtcggtcgcgacatcgacggcactc | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCGC | AciI | 651 295 54 | ||
| RAATTY | AcsI, ApoI, XapI | 428 189 150 95 66 40 25 7 | ||||
| GACNNNGTC | AspI, PflFI, PsyI, TelI, Tth111I | 1000 | ||||
| CCSGG | AsuC2I, BcnI, CauII, EcoHI, NciI | 479 317 204 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 1000 | ||||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 430 317 169 49 35 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 404 317 129 76 74 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 417 287 97 72 55 36 21 13 2 | ||||
| TCNGA | Hpy188I | 509 258 107 56 48 22 | ||||
| CGWCG | Hpy99I | 485 395 120 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 175 166 144 122 114 95 51 25 23 20 20 17 15 7 6 | ||||
| Polymorphic_strain_digest (12) | ||||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024235 | ||||
| Transcript | CBG00927.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG00927.1:c.93T>C | |||||
| HGVSp | CBP05855.1:p.Asn31%3D | |||||
| cDNA_position | 122 | |||||
| CDS_position | 93 | |||||
| Protein_position | 31 | |||||
| Exon_number | 3/8 | |||||
| Codon_change | aaT/aaC | |||||
| Amino_acid_change | N | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
