WormBase Tree Display for Variation: WBVar00252217
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WBVar00252217 | Name | Public_name | tm3560 | |||||
---|---|---|---|---|---|---|---|---|
Other_name (13) | ||||||||
HGVSg | CHROMOSOME_V:g.4501482_4501912delinsC | |||||||
Sequence_details | SMap | S_parent | Sequence | T28F12 | ||||
Flanking_sequences | ttgtgcctgtttttttttcaaaattaaaca | acagacccaagagaatgctgacaagcagta | ||||||
Mapping_target | T28F12 | |||||||
Source_location | 7 | CHROMOSOME_V | 4501481 | 4501913 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Insertion | C | ||||||
Deletion | ||||||||
PCR_product | tm3560_external | |||||||
tm3560_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 3560 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00006796 | ||||||
Transcript | T28F12.2h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2h.1:c.83+82_235-5delinsC | |||||||
Intron_number | 1-2/8 | |||||||
Exon_number | 2/9 | |||||||
T28F12.2e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2e.1:c.194+82_346-5delinsC | |||||||
Intron_number | 2-3/9 | |||||||
Exon_number | 3/10 | |||||||
T28F12.2d.4 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2d.4:c.-1043+82_-891-5delinsC | |||||||
Intron_number | 2-3/11 | |||||||
Exon_number | 3/12 | |||||||
T28F12.2d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2d.1:c.-1043+82_-891-5delinsC | |||||||
Intron_number | 2-3/11 | |||||||
Exon_number | 3/12 | |||||||
T28F12.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2a.1:c.305+82_457-5delinsC | |||||||
Intron_number | 3-4/11 | |||||||
Exon_number | 4/12 | |||||||
T28F12.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2b.1:c.194+82_346-5delinsC | |||||||
Intron_number | 3-4/11 | |||||||
Exon_number | 4/12 | |||||||
T28F12.2d.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2d.2:c.-1061+82_-909-5delinsC | |||||||
Intron_number | 2-3/11 | |||||||
Exon_number | 3/12 | |||||||
T28F12.2d.5 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2d.5:c.-1055+82_-903-5delinsC | |||||||
Intron_number | 1-2/10 | |||||||
Exon_number | 2/11 | |||||||
T28F12.2c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2c.1:c.-1625+82_-1473-5delinsC | |||||||
Intron_number | 2-3/10 | |||||||
Exon_number | 3/11 | |||||||
T28F12.2d.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2d.3:c.-1061+82_-909-5delinsC | |||||||
Intron_number | 2-3/11 | |||||||
Exon_number | 3/12 | |||||||
T28F12.2g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2g.1:c.83+82_235-5delinsC | |||||||
Intron_number | 1-2/8 | |||||||
Exon_number | 2/9 | |||||||
T28F12.2c.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2c.2:c.-1241+82_-1089-5delinsC | |||||||
Intron_number | 2-3/10 | |||||||
Exon_number | 3/11 | |||||||
T28F12.2f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | T28F12.2f.1:c.305+82_457-5delinsC | |||||||
Intron_number | 3-4/10 | |||||||
Exon_number | 4/11 | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | V | ||||||
Description | Phenotype | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as lethal or sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
WBPhenotype:0000688 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as lethal or sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
Remark | 4036/4037-C-4467/4468 (431 bp deletion + 1 bp insertion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |