WormBase Tree Display for Variation: WBVar00000202
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| WBVar00000202 | Evidence | Paper_evidence | WBPaper00004491 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | ar114 | |||||
| Other_name | CE17716:p.Trp1157Ter | ||||||
| F26F12.7.1:c.3471G>A | |||||||
| HGVSg | CHROMOSOME_V:g.5830499G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | F26F12 | |||
| Flanking_sequences | aggagaagatggcgaagaaaaagctgaatg | caaaacgaatatctaagctcgttcaaggtg | |||||
| Mapping_target | F26F12 | ||||||
| Type_of_mutation | Substitution | g | a | ||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00008004 | ||||||
| Laboratory | GS | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00002637 | |||||
| Transcript | F26F12.7.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F26F12.7.1:c.3471G>A | ||||||
| HGVSp | CE17716:p.Trp1157Ter | ||||||
| cDNA_position | 3499 | ||||||
| CDS_position | 3471 | ||||||
| Protein_position | 1157 | ||||||
| Exon_number | 5/9 | ||||||
| Codon_change | tgG/tgA | ||||||
| Amino_acid_change | W/* | ||||||
| Interactor | WBInteraction000008537 | ||||||
| WBInteraction000008538 | |||||||
| Genetics | Interpolated_map_position | V | -0.812882 | ||||
| Description | Phenotype | WBPhenotype:0000376 | Person_evidence | WBPerson261 | |||
| Curator_confirmed | WBPerson712 | ||||||
| WBPhenotype:0000510 | Person_evidence | WBPerson261 | |||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | abnormal L4 vulval invagination | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| WBPhenotype:0000688 | Person_evidence | WBPerson261 | |||||
| Curator_confirmed | WBPerson712 | ||||||
| WBPhenotype:0000696 | Person_evidence | WBPerson261 | |||||
| Curator_confirmed | WBPerson712 | ||||||
| WBPhenotype:0001260 | Person_evidence | WBPerson261 | |||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | abnormal oocytes | Person_evidence | WBPerson261 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00026005 | ||||||
| Method | Substitution_allele |
