WormBase Tree Display for Variation: WBVar00000478
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| WBVar00000478 | Evidence | Paper_evidence | WBPaper00003145 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | bn64 | |||||||
| Other_name | C09G4.5.1:c.1008G>A | ||||||||
| CE24796:p.Trp336Ter | |||||||||
| HGVSg | CHROMOSOME_IV:g.8512843G>A | ||||||||
| Sequence_details | SMap | S_parent | Sequence | C09G4 | |||||
| Flanking_sequences | atgtggcaatgaaaaggcaattcatttttg | agatttgggccacctaagggagaagttgaa | |||||||
| Mapping_target | C09G4 | ||||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00003145 | ||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Laboratory | SS | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00003224 | |||||||
| Transcript | C09G4.5.1 | VEP_consequence | stop_gained | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | C09G4.5.1:c.1008G>A | ||||||||
| HGVSp | CE24796:p.Trp336Ter | ||||||||
| cDNA_position | 1161 | ||||||||
| CDS_position | 1008 | ||||||||
| Protein_position | 336 | ||||||||
| Exon_number | 7/9 | ||||||||
| Codon_change | tgG/tgA | ||||||||
| Amino_acid_change | W/* | ||||||||
| Interactor | WBInteraction000050874 | ||||||||
| WBInteraction000050881 | |||||||||
| WBInteraction000050884 | |||||||||
| WBInteraction000050888 | |||||||||
| WBInteraction000050891 | |||||||||
| WBInteraction000557643 | |||||||||
| Genetics | Interpolated_map_position | IV | 3.88042 | ||||||
| Mapping_data | In_multi_point | 2156 | |||||||
| In_pos_neg_data | 6681 | ||||||||
| 6682 | |||||||||
| Description | Phenotype | WBPhenotype:0001504 | Paper_evidence | WBPaper00001477 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00001477 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00001477 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00001477 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Maternal | |||||||||
| Reference | WBPaper00001477 | ||||||||
| Method | Substitution_allele |
