WormBase Tree Display for Variation: WBVar00002184

WBVar00002184 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00002184
    Other_name: cbs2548
      cb2548 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.8443911G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: acaaaatgtccaacaaaacaatctt ctcaattaatggctctgtccttttt
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 765 235
        CTAG BfaI, MaeI, XspI 429 326 107 62 41 21 14
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 583 392 25
        RGCY CviJI, CviTI 381 217 175 106 96 25
      Polymorphic_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 1000
        CTAG BfaI, MaeI, XspI 429 326 107 103 21 14
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 583 234 158 25
        RGCY CviJI, CviTI 381 217 158 106 96 25 17
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034768
    Transcript: CBG14193.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14193.1:c.16+701G>T
        Intron_number: 2/5
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP