WormBase Tree Display for Variation: WBVar00002249
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| WBVar00002249 | Evidence | Paper_evidence | WBPaper00030778 | ||
|---|---|---|---|---|---|
| WBPaper00055507 | |||||
| Name | Public_name | WBVar00002249 | |||
| Other_name | cbs2562 | ||||
| cb2562 | Paper_evidence | WBPaper00055507 | |||
| HGVSg | chrX:g.8631680T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | |
| Flanking_sequences | gcaccccagataaacgtccacgtac | tatcatgtgacttctgataaagatg | |||
| Mapping_target | cb25.fpc3857a | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | Reference_strain_digest (11) | ||||
| Polymorphic_strain_digest (11) | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis briggsae | |||
| Strain | WBStrain00041077 | ||||
| Laboratory | CP | ||||
| Person | WBPerson3706 | ||||
| WBPerson227 | |||||
| WBPerson225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00034794 | |||
| Transcript | CBG14225a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | CBG14225a.1:c.648T>C | ||||
| HGVSp | CBP41965.1:p.Thr216%3D | ||||
| cDNA_position | 648 | ||||
| CDS_position | 648 | ||||
| Protein_position | 216 | ||||
| Exon_number | 6/13 | ||||
| Codon_change | acA/acC | ||||
| Amino_acid_change | T | ||||
| CBG14225b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG14225b.1:c.648T>C | ||||
| HGVSp | CBP44059.1:p.Thr216%3D | ||||
| cDNA_position | 648 | ||||
| CDS_position | 648 | ||||
| Protein_position | 216 | ||||
| Exon_number | 6/14 | ||||
| Codon_change | acA/acC | ||||
| Amino_acid_change | T | ||||
| CBG14225c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG14225c.1:c.648T>C | ||||
| HGVSp | CBP38988.1:p.Thr216%3D | ||||
| cDNA_position | 648 | ||||
| CDS_position | 648 | ||||
| Protein_position | 216 | ||||
| Exon_number | 6/13 | ||||
| Codon_change | acA/acC | ||||
| Amino_acid_change | T | ||||
| CBG14225d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG14225d.1:c.648T>C | ||||
| HGVSp | CBP41042.1:p.Thr216%3D | ||||
| cDNA_position | 648 | ||||
| CDS_position | 648 | ||||
| Protein_position | 216 | ||||
| Exon_number | 6/14 | ||||
| Codon_change | acA/acC | ||||
| Amino_acid_change | T | ||||
| Reference | WBPaper00030778 | ||||
| WBPaper00055507 | |||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | ||||
| This SNP was observed in 1 sequencing read(s) | |||||
| Method | SNP |
