WormBase Tree Display for Variation: WBVar00002269

WBVar00002269 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00002269
    Other_name: cbs2566
      cb2566 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.8682909A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: tttccaatgcatcgctcaccatcag tcagtcgacacctacaccttcccct
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (12)
      Polymorphic_strain_digest (12)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034799
    Transcript: CBG14233a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14233a.1:c.1983-463A>G
        Intron_number: 11/15
      CBG14233b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14233b.1:c.1800-463A>G
        Intron_number: 11/15
      CBG14233c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14233c.1:c.381-463A>G
        Intron_number: 4/8
      CBG14233d.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14233d.1:c.-295A>G
        cDNA_position: 236
        Exon_number: 1/6
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP