WormBase Tree Display for Variation: WBVar00003474
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WBVar00003474 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00003474 | ||||
Other_name | cbs3397 | |||||
cb3397 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
Flanking_sequences | tttttcttgaatttttatataggac | acaaaaacgatctaatattgcttga | ||||
Mapping_target | cb25.fpc0072a | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 693 179 103 25 | ||
CCGC | AciI | 426 265 204 63 25 17 | ||||
RAATTY | AcsI, ApoI, XapI | 379 171 166 51 43 42 39 33 22 17 14 9 8 6 | ||||
CACGTG | AcvI, BbrPI, Eco72I, PmaCI, PmlI | 696 304 | ||||
CTRYAG | BfmI, BstSFI, SfcI, SfeI | 744 256 | ||||
CTGCAG | BloHII, BstMAI, PstI | 740 260 | ||||
YACGTR | BsaAI, BstBAI | 696 304 | ||||
CTNAG | BstDEI, DdeI | 588 412 | ||||
RGCY | CviJI, CviTI | 156 144 122 90 84 68 62 57 56 43 41 34 28 8 7 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 369 204 147 105 90 41 30 14 | ||||
CAC | HindI | 176 132 118 92 84 79 69 61 49 43 31 26 13 12 11 4 | ||||
GANTC | HinfI | 357 207 202 139 59 36 | ||||
TCNNGA | Hpy178III, Hpy188III | 330 194 160 145 47 45 40 30 9 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 605 303 92 | ||||
TTAA | MseI, Tru1I, Tru9I | 485 256 160 97 2 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 164 161 107 87 74 57 46 43 42 34 33 31 27 22 17 14 9 8 8 6 5 5 | ||||
Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 390 303 179 103 25 | |||
CCGC | AciI | 390 265 204 63 36 25 17 | ||||
RAATTY | AcsI, ApoI, XapI | 379 171 145 57 51 42 39 33 22 21 17 9 8 6 | ||||
CACGTG | AcvI, BbrPI, Eco72I, PmaCI, PmlI | 1000 | ||||
CTRYAG | BfmI, BstSFI, SfcI, SfeI | 1000 | ||||
CTGCAG | BloHII, BstMAI, PstI | 1000 | ||||
YACGTR | BsaAI, BstBAI | 1000 | ||||
CTNAG | BstDEI, DdeI | 1000 | ||||
RGCY | CviJI, CviTI | 156 144 122 118 98 84 68 62 56 43 34 8 7 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 369 204 138 90 56 49 41 30 14 9 | ||||
CAC | HindI | 176 132 118 92 84 79 73 61 49 43 31 26 13 12 11 | ||||
GANTC | HinfI | 357 202 195 139 59 36 12 | ||||
TCNNGA | Hpy178III, Hpy188III | 330 160 145 136 58 47 45 40 30 9 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 908 92 | ||||
TTAA | MseI, Tru1I, Tru9I | 489 252 160 97 2 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 164 140 107 87 74 57 43 42 34 33 31 31 27 22 21 17 15 14 9 8 8 6 5 5 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |