Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00003474

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00003474EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00003474
Other_namecbs3397
cb3397Paper_evidenceWBPaper00055507
Sequence_detailsSMapS_parentSequencecb25.fpc0072a
Flanking_sequencestttttcttgaatttttatataggacacaaaaacgatctaatattgcttga
Mapping_targetcb25.fpc0072a
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCGCGAccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI693 179 103 25
CCGCAciI426 265 204 63 25 17
RAATTYAcsI, ApoI, XapI379 171 166 51 43 42 39 33 22 17 14 9 8 6
CACGTGAcvI, BbrPI, Eco72I, PmaCI, PmlI696 304
CTRYAGBfmI, BstSFI, SfcI, SfeI744 256
CTGCAGBloHII, BstMAI, PstI740 260
YACGTRBsaAI, BstBAI696 304
CTNAGBstDEI, DdeI588 412
RGCYCviJI, CviTI156 144 122 90 84 68 62 57 56 43 41 34 28 8 7
TCGAEsaBC3I, TaqI, TthHB8I369 204 147 105 90 41 30 14
CACHindI176 132 118 92 84 79 69 61 49 43 31 26 13 12 11 4
GANTCHinfI357 207 202 139 59 36
TCNNGAHpy178III, Hpy188III330 194 160 145 47 45 40 30 9
ACGTHpyCH4IV, MaeII, TaiI, TscI605 303 92
TTAAMseI, Tru1I, Tru9I485 256 160 97 2
AATTSse9I, TasI, Tsp509I, TspEI164 161 107 87 74 57 46 43 42 34 33 31 27 22 17 14 9 8 8 6 5 5
Polymorphic_strain_digestCGCGAccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI390 303 179 103 25
CCGCAciI390 265 204 63 36 25 17
RAATTYAcsI, ApoI, XapI379 171 145 57 51 42 39 33 22 21 17 9 8 6
CACGTGAcvI, BbrPI, Eco72I, PmaCI, PmlI1000
CTRYAGBfmI, BstSFI, SfcI, SfeI1000
CTGCAGBloHII, BstMAI, PstI1000
YACGTRBsaAI, BstBAI1000
CTNAGBstDEI, DdeI1000
RGCYCviJI, CviTI156 144 122 118 98 84 68 62 56 43 34 8 7
TCGAEsaBC3I, TaqI, TthHB8I369 204 138 90 56 49 41 30 14 9
CACHindI176 132 118 92 84 79 73 61 49 43 31 26 13 12 11
GANTCHinfI357 202 195 139 59 36 12
TCNNGAHpy178III, Hpy188III330 160 145 136 58 47 45 40 30 9
ACGTHpyCH4IV, MaeII, TaiI, TscI908 92
TTAAMseI, Tru1I, Tru9I489 252 160 97 2
AATTSse9I, TasI, Tsp509I, TspEI164 140 107 87 74 57 43 42 34 33 31 31 27 22 21 17 15 14 9 8 8 6 5 5
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP