WormBase Tree Display for Variation: WBVar00003554
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WBVar00003554 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
WBPaper00055507 | |||||
Name | Public_name | WBVar00003554 | |||
Other_name | cbs3413 | ||||
cb3413 | Paper_evidence | WBPaper00055507 | |||
HGVSg | chrII:g.5051622A>G | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | |
Flanking_sequences | ccgctggaaatgtctgaaagtcgct | cccgtaaatcgcgccaaaccctcgc | |||
Mapping_target | cb25.fpc0072a | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP (2) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00027001 | |||
Transcript | CBG04293a.1 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG04293a.1:c.-246A>G | ||||
cDNA_position | 474 | ||||
Exon_number | 1/12 | ||||
CBG04293b.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG04293b.1:c.-246A>G | ||||
cDNA_position | 474 | ||||
Exon_number | 1/11 | ||||
Reference | WBPaper00030778 | ||||
WBPaper00055507 | |||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |