WormBase Tree Display for Variation: WBVar00004549
expand all nodes | collapse all nodes | view schema
WBVar00004549 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00004549 | ||||
Other_name | cbs4085 | |||||
cb4085 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIV:g.11511281T>C | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4069d | ||
Flanking_sequences | gaagcagcagttagatcctttggag | tttggtcaatcgttgagaagattca | ||||
Mapping_target | cb25.fpc4069d | |||||
Type_of_mutation | Substitution | T | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TGCGCA | Acc16I, AviII, FspI, MstI, NsbI | 843 157 | ||
CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 1000 | ||||
AGCT | AluI | 296 284 176 125 51 45 17 6 | ||||
RGCY | CviJI, CviTI | 296 272 125 99 77 51 45 17 12 6 | ||||
Polymorphic_strain_digest | TGCGCA | Acc16I, AviII, FspI, MstI, NsbI | 1000 | |||
CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 842 158 | ||||
AGCT | AluI | 284 228 176 125 68 51 45 17 6 | ||||
RGCY | CviJI, CviTI | 272 228 125 99 77 68 51 45 17 12 6 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00037279 | ||||
Transcript | CBG17724.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
HGVSc | CBG17724.1:c.1390A>G | |||||
HGVSp | CBP18995.1:p.Thr464Ala | |||||
cDNA_position | 1456 | |||||
CDS_position | 1390 | |||||
Protein_position | 464 | |||||
Exon_number | 6/12 | |||||
Codon_change | Act/Gct | |||||
Amino_acid_change | T/A | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |