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WormBase Tree Display for Variation: WBVar00004616

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Name Class

WBVar00004616NamePublic_nameWBVar00004616
Other_namepas12520
haw112972
cewivar00067150
ZC123.4b.1:c.755+26G>A
ZC123.4a.1:c.1007+26G>A
ZC123.4c.1:c.539+26G>A
HGVSgCHROMOSOME_I:g.843687C>T
Sequence_detailsSMapS_parentSequenceZC123
Flanking_sequencesgcgcacacaccaggttactcatttcacgccaagctgcggaaccctgaacgtgtccgccgctccaaacaactccctttcgcaatacgttgagcacacaccaagctgcggaacccccaacgtgtcggccgctccgaacaaccacttctacgcacttcattgcgcacacaccaggctactcatttcacgccaagctgcggaaccccgaacgtgtcggccgctccaaatgaccacctttcgcgcttcaacggcgtcggcgtgaggcccgaatttcgcgcctcactctgctgggagccctatcaaactagggagcagtttgaaaactaacctatgaagaatcttcttcctatgacaaaaatcgagtccgcggagaagttgaaagaggagaagcttgatgtcaatgctatccaacccatagacgttctgctccaggtacttgctcaaatccattttcatgtactcgaacacaaaagttagctggtggtgttgatagaagatgtcgtgcaaagagacgatattcgcatgacggaggtttctgagaagcgaggcttcacggatagcggtgaatgggagaccttcttgaaattgaagtttgatctcttt
Mapping_targetZC123
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (31)
LaboratoryAX
PersonWBPerson6900
WBPerson4037
AnalysisWGS_Pasadena_Quinlan
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00532837
WBVar01291995
StatusLive
AffectsGeneWBGene00022519
TranscriptZC123.4c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZC123.4c.1:c.539+26G>A
Intron_number2/5
ZC123.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZC123.4a.1:c.1007+26G>A
Intron_number7/11
ZC123.4b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZC123.4b.1:c.755+26G>A
Intron_number5/9
ReferenceWBPaper00038208
WBPaper00037807
MethodWGS_Pasadena_Quinlan