WormBase Tree Display for Variation: WBVar00005960

WBVar00005960 Evidence: Paper_evidence: WBPaper00040707
  Name: Public_name: WBVar00005960
    Other_name (14)
    HGVSg: CHROMOSOME_V:g.11907397T>C
  Sequence_details: SMap: S_parent: Sequence: R31
    Flanking_sequences: cagttggtcaacttcttcaacgata gctgcaatgaagggtccagcacagc
    Mapping_target: R31
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: WGS_Hawaiian_Waterston
          Million_mutation_project_reanalysis
          WGS_Andersen
    Laboratory: RW
      QX
    Person: WBPerson1562
      WBPerson1730
    Analysis: WGS_Hawaiian_Waterston
      Million_mutation_project_reanalysis
      WGS_Andersen
    History: Acquires_merge: WBVar01461917
    Status: Live
  Affects: Gene: WBGene00004855
    Transcript: R31.1e.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: R31.1e.1:c.4935T>C
        HGVSp: CE52987:p.Tyr1645=
        cDNA_position: 4935
        CDS_position: 4935
        Protein_position: 1645
        Exon_number: 8/17
        Codon_change: taT/taC
        Amino_acid_change: Y
      R31.1a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: R31.1a.1:c.4935T>C
        HGVSp: CE41581:p.Tyr1645=
        cDNA_position: 5050
        CDS_position: 4935
        Protein_position: 1645
        Exon_number: 9/20
        Codon_change: taT/taC
        Amino_acid_change: Y
      R31.1c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: R31.1c.1:c.4377T>C
        HGVSp: CE46009:p.Tyr1459=
        cDNA_position: 4377
        CDS_position: 4377
        Protein_position: 1459
        Exon_number: 5/15
        Codon_change: taT/taC
        Amino_acid_change: Y
      R31.1b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: R31.1b.1:c.4626T>C
        HGVSp: CE27773:p.Tyr1542=
        cDNA_position: 4626
        CDS_position: 4626
        Protein_position: 1542
        Exon_number: 7/17
        Codon_change: taT/taC
        Amino_acid_change: Y
      R31.1d.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: R31.1d.1:c.4626T>C
        HGVSp: CE46252:p.Tyr1542=
        cDNA_position: 4868
        CDS_position: 4626
        Protein_position: 1542
        Exon_number: 8/18
        Codon_change: taT/taC
        Amino_acid_change: Y
      R31.1f.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: R31.1f.1:c.4377T>C
        HGVSp: CE53064:p.Tyr1459=
        cDNA_position: 4377
        CDS_position: 4377
        Protein_position: 1459
        Exon_number: 5/14
        Codon_change: taT/taC
        Amino_acid_change: Y
  Reference: WBPaper00040707
  Remark: [20081124 db] this Variation was previously named hw82290
  Method: WGS_Hawaiian_Waterston