WormBase Tree Display for Variation: WBVar00006346
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WBVar00006346 | Name | Public_name | WBVar00006346 | ||
---|---|---|---|---|---|
Other_name | pas12866 | ||||
cewivar00017797 | |||||
T17H7.4c.1:c.88-543C>A | |||||
T17H7.4j.1:c.247-543C>A | |||||
T17H7.4a.1:c.88-543C>A | |||||
T17H7.4g.1:c.-684-543C>A | |||||
T17H7.4b.1:c.88-543C>A | |||||
HGVSg | CHROMOSOME_III:g.743725G>T | ||||
Sequence_details | SMap | S_parent | Sequence | T17H7 | |
Flanking_sequences | gagtagagtttattagtatttcgcttgaaaaaacttaaactggtcaaaaaccgccaattttcacaatgagacttcacaaaaaattttcgaaaatttttatggcgggttaaaatttcgaaaactaaagagccaaatttatagaggactagaggtaaactaacattaaatttaaactggtgaatgagacttaaccaactttatttatcatttgaaacaaactagtaaaatttcaaaaaattctaatcaattcatgaagaaaatttaaacgtcttcctattccttttcttgtaaaaattaaat | ttccatacaaatgtttaatcattttttccaaaactagagaagttaccttttattaaaaatataacataaactataaggctacggaacaagttataaagagatacttaaacgattattaacatgctcaatttttgaaagtttagctagatgtagtcacaatttttatccgtcattgaaggtggggttgcgccagtgaagattttttttaaatgcatatagtgatctaaaatagcctaataaaacattctaaaaaaatgtcagatttttcatattttccactccaaattttttttcatattt | |||
Mapping_target | T17H7 | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (17) | |||||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00003936 | |||
Transcript | T17H7.4g.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T17H7.4g.1:c.-684-543C>A | ||||
Intron_number | 2/18 | ||||
T17H7.4c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T17H7.4c.1:c.88-543C>A | ||||
Intron_number | 1/17 | ||||
T17H7.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T17H7.4b.1:c.88-543C>A | ||||
Intron_number | 1/15 | ||||
T17H7.4j.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T17H7.4j.1:c.247-543C>A | ||||
Intron_number | 4/20 | ||||
T17H7.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T17H7.4a.1:c.88-543C>A | ||||
Intron_number | 2/18 | ||||
Method | WGS_Pasadena_Quinlan |