WormBase Tree Display for Variation: WBVar00006879

WBVar00006879 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00006879
    Other_name: cbs5220
      cb5220 Paper_evidence: WBPaper00055507
    HGVSg: chrIII:g.8899552C>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: aaattttctcgaatcgacccggaga gttatcagtgtattcccccatgctt
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (14)
      Polymorphic_strain_digest (14)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031390
    Transcript: CBG09876a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG09876a.1:c.114C>A
        HGVSp: CBP45673.1:p.Glu38%3D
        cDNA_position: 314
        CDS_position: 114
        Protein_position: 38
        Exon_number: 2/7
        Codon_change: gaG/gaA
        Amino_acid_change: E
      CBG09876b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09876b.1:c.67-1036C>A
        Intron_number: 1/4
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP