WormBase Tree Display for Variation: WBVar00010056
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| WBVar00010056 | Name | Public_name | WBVar00010056 | ||
|---|---|---|---|---|---|
| Other_name | pas13608 | ||||
| haw16486 | |||||
| haw123919 | |||||
| cewivar00076391 | |||||
| T27A1.5b.1:c.615-43C>T | |||||
| T27A1.5a.1:c.930-43C>T | |||||
| HGVSg | CHROMOSOME_II:g.524890C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T27A1 | |
| Flanking_sequences | tttggtctatatgactgttggattctttggatttttgagatatggaaatgatattaaggatacgttgacacttaatcttccacagactccgtaggttgaatttttagatttttatataatataaaacttctaaaattgcaaaaaaaaagtcaggtttgaacacagttccaagagttttggttttttgaagaaaaaaaactaaattctttattttttcaattaaaaaaaactaaacagtgttaaaaaatttttttttgaaatttccaaattgtatgcaaagaataaacgagtaatattttt | taaatgaaagtaacaagttttagaaaaaaaattaaatttcagattctaccaagccatcaaagttatgttcgttctttgcattttggtgtcctacccacttcaattttatgttccgatggaaagagttgaaaaatggatcaagcggaaggtaattatgaaacataatcagctattgactgagtagcgactcggtgtgacacggagctactgatttgagttgtccgcaactttaaaattgtcatttctttgtatttttcggttcaaaaacaatagcaaagcagttcttctgtagatgaaaat | |||
| Mapping_target | T27A1 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (15) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00543784 | |||
| WBVar00163236 | |||||
| WBVar01358070 | |||||
| WBVar01291999 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020837 | |||
| Transcript | T27A1.5b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27A1.5b.1:c.615-43C>T | ||||
| Intron_number | 2/4 | ||||
| T27A1.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T27A1.5a.1:c.930-43C>T | ||||
| Intron_number | 4/7 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
