WormBase Tree Display for Variation: WBVar00017769

WBVar00017769 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00017769
    Other_name: cbs16168
      cb16168 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0081
    Flanking_sequences: gattctttgaccctcttttcttccg agtttctttttatgtgacactagca
    Mapping_target: cb25.fpc0081
    Type_of_mutation: Substitution: C A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 503 497
        GCGC AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI 519 243 238
        CTAG BfaI, MaeI, XspI 519 267 208 5 1
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 565 318 117
        RGCY CviJI, CviTI 585 209 152 34 20
        TGCA CviRI, HpyCH4V 677 191 111 21
        CAC HindI 201 94 84 83 78 69 63 54 48 43 41 37 31 20 19 11 11 6 3 2 2
        TCNGA Hpy188I 500 362 37 37 32 23 9
      Polymorphic_strain_digest: CCGC AciI 1000
        GCGC AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI 757 243
        CTAG BfaI, MaeI, XspI 519 267 213 1
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 883 117
        RGCY CviJI, CviTI 585 229 152 34
        TGCA CviRI, HpyCH4V 550 191 127 111 21
        CAC HindI 201 84 83 78 69 63 57 54 48 43 41 37 37 31 20 19 11 11 6 3 2 2
        TCNGA Hpy188I 401 362 99 37 37 32 23 9
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP