WormBase Tree Display for Variation: WBVar00017824
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| WBVar00017824 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00017824 | ||||
| Other_name | cbs16179 | |||||
| cb16179 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIV:g.12263642C>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0081 | ||
| Flanking_sequences | gtttgcgttaccaaatttctatcta | aacgggtccaatcgaatgcgatgtg | ||||
| Mapping_target | cb25.fpc0081 | |||||
| Type_of_mutation | Substitution | C | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CTAG | BfaI, MaeI, XspI | 1000 | ||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 353 175 144 124 108 91 5 | ||||
| RCATGY | BstNSI, NspI, XceI | 1000 | ||||
| TCNNGA | Hpy178III, Hpy188III | 420 281 87 84 55 51 22 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 202 171 135 119 118 85 75 36 31 19 9 | ||||
| TCTAGA | XbaI | 1000 | ||||
| Polymorphic_strain_digest | CTAG | BfaI, MaeI, XspI | 503 497 | |||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 353 266 144 124 108 5 | ||||
| RCATGY | BstNSI, NspI, XceI | 559 441 | ||||
| TCNNGA | Hpy178III, Hpy188III | 420 281 84 55 55 51 32 22 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 221 171 135 119 118 85 75 36 31 9 | ||||
| TCTAGA | XbaI | 504 496 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00027128 | ||||
| Transcript | CBG04463.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG04463.1:c.521C>G | |||||
| HGVSp | CBP15056.1:p.Thr174Arg | |||||
| cDNA_position | 531 | |||||
| CDS_position | 521 | |||||
| Protein_position | 174 | |||||
| Exon_number | 3/4 | |||||
| Codon_change | aCa/aGa | |||||
| Amino_acid_change | T/R | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
