WormBase Tree Display for Variation: WBVar00022361
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| WBVar00022361 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00022361 | |||
| Other_name | pas16069 | ||||
| cewivar00022507 | |||||
| F53A3.4d.3:c.39-312G>A | |||||
| F53A3.4d.1:c.39-312G>A | |||||
| F53A3.4d.2:c.39-312G>A | |||||
| F53A3.4b.1:c.4905-312G>A | |||||
| F53A3.4a.1:c.4800-312G>A | |||||
| HGVSg | CHROMOSOME_III:g.1933872G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F53A3 | |
| Flanking_sequences | ttttggctgaatttgtgtcaaaattcacttttttttttactgaaaattcgaattttccccctaaaaatcgatatttcccctgtgacttgtgcgtttctcagatttttggcataaaaactgtatttattcacattttcagccttaaattggctgaaaatgtgaataaataccgtatttctgccaacaatttgacaatagagcacatttgtcactcggagatgcggaacctatgcccaaattttcatttttacggaaaacttgtgattttcacagattttcagtcgaaaatgattttagtgt | atttttgttgcgaaatctcgatttttcaatgtcattttcgaactctccacacaatttcaccccaaaatcaagttttcccggctttctagctttaaatttgaattcccgggggtactgtagccccaaaagtacgcaaacacggagcatcccacgacaaaatgcacagttttctgaaattttgcaaaaatgtgcaaattaggggtaaaatggtgctctgaattcgaatttcgcactgaaaaatcgtgaaaatgcctagtttttgagttttcctataaaaaatttgaaagttttcaaaatttg | |||
| Mapping_target | F53A3 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (18) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01326443 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00004128 | |||
| Transcript | F53A3.4d.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4d.2:c.39-312G>A | ||||
| Intron_number | 6/10 | ||||
| F53A3.4d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4d.1:c.39-312G>A | ||||
| Intron_number | 7/11 | ||||
| F53A3.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4b.1:c.4905-312G>A | ||||
| Intron_number | 19/23 | ||||
| F53A3.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4a.1:c.4800-312G>A | ||||
| Intron_number | 19/23 | ||||
| F53A3.4d.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4d.3:c.39-312G>A | ||||
| Intron_number | 6/10 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
