WormBase Tree Display for Variation: WBVar00025769
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| WBVar00025769 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00025769 | ||||
| Other_name | cbs22407 | |||||
| cb22407 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.13236065A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4126 | ||
| Flanking_sequences | aatcattgccggtttccaaactatt | acatctatgcaatcatccagcttct | ||||
| Mapping_target | cb25.fpc4126 | |||||
| Type_of_mutation | Substitution | A | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TTTAAA | AhaIII, DraI | 652 348 | ||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 737 263 | ||||
| YACGTR | BsaAI, BstBAI | 730 229 41 | ||||
| TCATGA | BspHI, PagI, RcaI | 642 358 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 497 299 133 44 14 13 | ||||
| CAC | HindI | 150 141 118 107 96 81 70 53 38 25 17 17 14 13 12 11 9 9 8 8 3 | ||||
| TCNNGA | Hpy178III, Hpy188III | 627 357 16 | ||||
| TTAA | MseI, Tru1I, Tru9I | 502 252 151 90 5 | ||||
| CAYNNNNRTG | MslI, SmiMI | 989 11 | ||||
| TTATAA | PsiI | 1000 | ||||
| Polymorphic_strain_digest | TTTAAA | AhaIII, DraI | 1000 | |||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| YACGTR | BsaAI, BstBAI | 771 229 | ||||
| TCATGA | BspHI, PagI, RcaI | 1000 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 755 133 44 41 14 13 | ||||
| CAC | HindI | 150 141 110 107 96 70 70 53 48 38 25 17 14 13 11 9 9 8 8 3 | ||||
| TCNNGA | Hpy178III, Hpy188III | 627 373 | ||||
| TTAA | MseI, Tru1I, Tru9I | 734 171 90 5 | ||||
| CAYNNNNRTG | MslI, SmiMI | 496 493 11 | ||||
| TTATAA | PsiI | 653 347 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00038490 | ||||
| Transcript | CBG19234.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG19234.1:c.1911T>G | |||||
| HGVSp | CBP19558.1:p.Val637%3D | |||||
| cDNA_position | 1913 | |||||
| CDS_position | 1911 | |||||
| Protein_position | 637 | |||||
| Exon_number | 13/15 | |||||
| Codon_change | gtT/gtG | |||||
| Amino_acid_change | V | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
