WormBase Tree Display for Variation: WBVar00025859
expand all nodes | collapse all nodes | view schema
| WBVar00025859 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00025859 | ||||
| Other_name | cbs22501 | |||||
| cb22501 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.13354574T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4126 | ||
| Flanking_sequences | ctcgagcgtttggcctgaacgcatt | aattctctgggacctgtcaaaaact | ||||
| Mapping_target | cb25.fpc4126 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 553 440 7 | ||
| ATGCAT | BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I | 785 215 | ||||
| YACGTR | BsaAI, BstBAI | 666 334 | ||||
| TGCA | CviRI, HpyCH4V | 279 205 126 115 105 100 60 10 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 354 287 169 85 53 39 13 | ||||
| CAC | HindI | 156 117 82 76 64 58 57 52 51 42 37 30 29 25 24 22 20 19 14 8 6 3 2 2 2 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 665 335 | ||||
| TTAA | MseI, Tru1I, Tru9I | 372 161 140 127 109 68 23 | ||||
| Polymorphic_strain_digest | GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 488 440 65 7 | |||
| ATGCAT | BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I | 505 280 215 | ||||
| YACGTR | BsaAI, BstBAI | 336 334 330 | ||||
| TGCA | CviRI, HpyCH4V | 205 174 126 115 105 105 100 60 10 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 354 226 169 85 61 53 39 13 | ||||
| CAC | HindI | 156 117 76 64 58 58 57 52 51 42 37 30 29 25 24 24 22 20 19 14 8 6 3 2 2 2 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 335 335 330 | ||||
| TTAA | MseI, Tru1I, Tru9I | 512 161 127 109 68 23 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00038510 | ||||
| Transcript | CBG19254.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG19254.1:c.1299T>C | |||||
| HGVSp | CBP35767.1:p.Phe433%3D | |||||
| cDNA_position | 1299 | |||||
| CDS_position | 1299 | |||||
| Protein_position | 433 | |||||
| Exon_number | 7/8 | |||||
| Codon_change | ttT/ttC | |||||
| Amino_acid_change | F | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
