WormBase Tree Display for Variation: WBVar00025864

WBVar00025864 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00025864
    Other_name: cbs22502
      cb22502 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4126
    Flanking_sequences: atgtagtgtttctgttaaaatcgac tcaaagttttcaatacgtgcacttc
    Mapping_target: cb25.fpc4126
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 590 410
        ATGCAT BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I 935 65
        YACGTR BsaAI, BstBAI 516 484
        TGCA CviRI, HpyCH4V 279 213 142 126 105 65 60 10
        TCGA EsaBC3I, TaqI, TthHB8I 466 222 169 53 39 38 13
        CAC HindI 156 130 82 76 64 63 52 42 37 30 29 28 25 24 24 24 22 22 20 19 14 8 3 2 2 2
        ACGT HpyCH4IV, MaeII, TaiI, TscI 515 389 96
        TTAA MseI, Tru1I, Tru9I 349 218 161 140 109 23
      Polymorphic_strain_digest: GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 590 345 65
        ATGCAT BfrBI, EcoT22I, Mph1103I, NsiI, Ppu10I, Zsp2I 655 280 65
        YACGTR BsaAI, BstBAI 484 330 186
        TGCA CviRI, HpyCH4V 213 174 142 126 105 105 65 60 10
        TCGA EsaBC3I, TaqI, TthHB8I 466 169 161 61 53 39 38 13
        CAC HindI 156 130 76 64 63 58 52 42 37 30 29 28 25 24 24 24 24 22 22 20 19 14 8 3 2 2 2
        ACGT HpyCH4IV, MaeII, TaiI, TscI 389 330 185 96
        TTAA MseI, Tru1I, Tru9I 489 218 161 109 23
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP