WormBase Tree Display for Variation: WBVar00025959
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WBVar00025959 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00025959 | ||||
Other_name | cbs22526 | |||||
cb22526 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4126 | ||
Flanking_sequences | gctaggtcaaagaacgacggagaga | gaacagatagaaatcgagatgagag | ||||
Mapping_target | cb25.fpc4126 | |||||
Type_of_mutation | Substitution | A | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CTNAG | BstDEI, DdeI | 716 139 96 30 19 | ||
AATT | Sse9I, TasI, Tsp509I, TspEI | 216 112 108 108 88 88 84 63 32 25 23 16 16 16 5 | ||||
Polymorphic_strain_digest | CTNAG | BstDEI, DdeI | 385 331 139 96 30 19 | |||
AATT | Sse9I, TasI, Tsp509I, TspEI | 239 112 108 108 88 88 84 63 32 25 16 16 16 5 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |