WormBase Tree Display for Variation: WBVar00029094

WBVar00029094 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00029094
    Other_name: cbs24824
      cb24824 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: tcggttagtatcatcaatacgacca attttaattgtctcttctctttctc
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGTACT Acc113I, ScaI 646 354
        RAATTY AcsI, ApoI, XapI 496 188 98 95 62 26 16 14 5
        GTAC AfaI, Csp6I, RsaI 646 281 73
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 280 243 123 113 105 95 41
        TGCA CviRI, HpyCH4V 565 272 141 22
        AATT Sse9I, TasI, Tsp509I, TspEI 283 116 103 77 72 63 62 62 26 21 18 18 16 15 14 14 9 6 5
        AATATT SspI 627 368 5
        WGTACW TatI 648 279 73
      Polymorphic_strain_digest: AGTACT Acc113I, ScaI 354 334 312
        RAATTY AcsI, ApoI, XapI 558 188 98 95 26 16 14 5
        GTAC AfaI, Csp6I, RsaI 334 312 281 73
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 280 243 123 113 100 95 41 5
        TGCA CviRI, HpyCH4V 402 272 163 141 22
        AATT Sse9I, TasI, Tsp509I, TspEI 283 116 103 77 72 68 63 62 26 21 18 18 16 15 14 14 9 5
        AATATT SspI 453 368 174 5
        WGTACW TatI 336 312 279 73
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP