WormBase Tree Display for Variation: WBVar00029114

WBVar00029114 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00029114
    Other_name: cbs24828
      cb24828 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: ttcataaagggccgctcaccgaaca tactgttattagcgctaccgaacac
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGTACT Acc113I, ScaI 811 189
        RAATTY AcsI, ApoI, XapI 496 188 170 62 28 26 16 14
        GTAC AfaI, Csp6I, RsaI 811 116 73
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 288 280 119 113 105 95
        TGCA CviRI, HpyCH4V 541 339 98 22
        AATT Sse9I, TasI, Tsp509I, TspEI 283 116 103 81 72 62 62 53 26 19 18 17 16 15 14 14 14 9 6
        AATATT SspI 792 208
        WGTACW TatI 813 114 73
      Polymorphic_strain_digest: AGTACT Acc113I, ScaI 499 312 189
        RAATTY AcsI, ApoI, XapI 558 188 170 28 26 16 14
        GTAC AfaI, Csp6I, RsaI 499 312 116 73
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 288 280 119 113 100 95 5
        TGCA CviRI, HpyCH4V 378 339 163 98 22
        AATT Sse9I, TasI, Tsp509I, TspEI 283 116 103 81 72 68 62 53 26 19 18 17 16 15 14 14 14 9
        AATATT SspI 618 208 174
        WGTACW TatI 501 312 114 73
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP