WormBase Tree Display for Variation: WBVar00029349

WBVar00029349 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00029349
    Other_name: cbs24900
      cb24900 Paper_evidence: WBPaper00055507
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: aactagcaactatcaaaaaattcta gaatacaaagttttccatctagtcc
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 563 437
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 563 437
        TCGA EsaBC3I, TaqI, TthHB8I 312 254 159 86 83 66 33 7
        CAC HindI 155 99 94 81 80 73 73 63 56 52 50 29 23 21 18 14 7 5 5 2
        TCNNGA Hpy178III, Hpy188III 667 190 74 69
      Polymorphic_strain_digest: GGWCC AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI 563 245 192
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 563 245 192
        TCGA EsaBC3I, TaqI, TthHB8I 566 159 86 83 66 33 7
        CAC HindI 149 99 94 81 75 73 73 63 56 52 50 29 23 21 18 14 7 6 5 5 5 2
        TCNNGA Hpy178III, Hpy188III 600 190 74 69 67
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034831
    Transcript: CBG14277.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        Intron_number: 6/8
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP