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WormBase Tree Display for Variation: WBVar00029484

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Name Class

WBVar00029484EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00029484
Other_namecbs24937
cb24937Paper_evidenceWBPaper00055507
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencesaaagaatacaaggaaaactgtgcgggtgcttttgcaactttaccgaaatc
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestAACGTTAclI, Psp1406I995 5
AGCTAluI321 277 251 114 37
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI1000
GCNNGCBstC8I, Cac8I00
GCNGCBthCI, Fnu4HI, Fsp4HI, ItaI, SatI936 38 26
RGCYCviJI, CviTI264 251 233 114 88 37 13
CACHindI189 158 123 78 66 52 51 48 38 30 29 24 23 19 19 18 14 7 7 5 2
TCNGAHpy188I469 277 125 86 43
ACGTHpyCH4IV, MaeII, TaiI, TscI474 453 68 5
GCSGCTauI1000
Polymorphic_strain_digestAACGTTAclI, Psp1406I1000
AGCTAluI321 314 251 114
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI535 465
GCNNGCBstC8I, Cac8I501 499
GCNGCBthCI, Fnu4HI, Fsp4HI, ItaI, SatI501 435 38 26
RGCYCviJI, CviTI264 233 135 116 114 88 50
CACHindI189 158 123 78 66 52 51 48 47 38 30 24 23 19 19 14 7 7 7
TCNGAHpy188I746 125 86 43
ACGTHpyCH4IV, MaeII, TaiI, TscI927 73
GCSGCTauI501 499
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP