WormBase Tree Display for Variation: WBVar00029484
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WBVar00029484 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00029484 | ||||
Other_name | cbs24937 | |||||
cb24937 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | aaagaatacaaggaaaactgtgcgg | gtgcttttgcaactttaccgaaatc | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | A | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | AACGTT | AclI, Psp1406I | 995 5 | ||
AGCT | AluI | 321 277 251 114 37 | ||||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 1000 | ||||
GCNNGC | BstC8I, Cac8I | 00 | ||||
GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 936 38 26 | ||||
RGCY | CviJI, CviTI | 264 251 233 114 88 37 13 | ||||
CAC | HindI | 189 158 123 78 66 52 51 48 38 30 29 24 23 19 19 18 14 7 7 5 2 | ||||
TCNGA | Hpy188I | 469 277 125 86 43 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 474 453 68 5 | ||||
GCSGC | TauI | 1000 | ||||
Polymorphic_strain_digest | AACGTT | AclI, Psp1406I | 1000 | |||
AGCT | AluI | 321 314 251 114 | ||||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 535 465 | ||||
GCNNGC | BstC8I, Cac8I | 501 499 | ||||
GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 501 435 38 26 | ||||
RGCY | CviJI, CviTI | 264 233 135 116 114 88 50 | ||||
CAC | HindI | 189 158 123 78 66 52 51 48 47 38 30 24 23 19 19 14 7 7 7 | ||||
TCNGA | Hpy188I | 746 125 86 43 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 927 73 | ||||
GCSGC | TauI | 501 499 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |