WormBase Tree Display for Variation: WBVar00029499
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WBVar00029499 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
WBPaper00055507 | |||||
Name | Public_name | WBVar00029499 | |||
Other_name | cbs24942 | ||||
cb24942 | Paper_evidence | WBPaper00055507 | |||
HGVSg | chrX:g.9337971A>C | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | |
Flanking_sequences | aaattttcttcaaatttagtttttc | aaggtttttcagttcctgtttcaag | |||
Mapping_target | cb25.fpc3857a | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | Reference_strain_digest (12) | ||||
Polymorphic_strain_digest (12) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00034896 | |||
Transcript | CBG14372a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14372a.1:c.507-30T>G | ||||
Intron_number | 7/8 | ||||
CBG14372b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14372b.1:c.525-30T>G | ||||
Intron_number | 7/8 | ||||
CBG14372c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14372c.1:c.448-30T>G | ||||
Intron_number | 6/7 | ||||
CBG14372d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG14372d.1:c.430-30T>G | ||||
Intron_number | 6/7 | ||||
Reference | WBPaper00030778 | ||||
WBPaper00055507 | |||||
Remark | Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |