WormBase Tree Display for Variation: WBVar00030769
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WBVar00030769 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00030769 | ||||
Other_name | cbs25354 | |||||
cb25354 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrV:g.3303590G>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc2310c | ||
Flanking_sequences | tgagtaagacatgaattttttcaaa | tacgataattaatttttagtgcttg | ||||
Mapping_target | cb25.fpc2310c | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 668 248 84 | ||
ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 746 220 34 | ||||
RGCY | CviJI, CviTI | 627 127 125 93 28 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 516 170 89 83 65 64 13 | ||||
CAC | HindI | 212 133 94 80 77 54 47 45 32 28 28 24 20 17 16 14 14 10 9 8 8 6 6 6 4 3 3 2 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 276 157 102 96 77 62 37 32 28 27 22 22 19 18 11 10 4 | ||||
Polymorphic_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 916 84 | |||
ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 966 34 | ||||
RGCY | CviJI, CviTI | 627 219 93 33 28 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 516 170 129 89 83 13 | ||||
CAC | HindI | 212 133 94 80 77 69 54 45 32 28 24 20 17 16 14 14 10 9 8 8 6 6 6 6 4 3 3 2 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 276 157 102 96 77 62 37 32 28 27 22 22 18 11 10 10 9 4 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00031876 | ||||
Transcript | CBG10497.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG10497.1:c.72-20C>A | |||||
Intron_number | 1/2 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |