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WormBase Tree Display for Variation: WBVar00030769

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Name Class

WBVar00030769EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00030769
Other_namecbs25354
cb25354Paper_evidenceWBPaper00055507
HGVSgchrV:g.3303590G>T
Sequence_detailsSMapS_parentSequencecb25.fpc2310c
Flanking_sequencestgagtaagacatgaattttttcaaatacgataattaatttttagtgcttg
Mapping_targetcb25.fpc2310c
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestTTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI668 248 84
ACNGTBst4CI, HpyCH4III, TaaI, Tsp4CI746 220 34
RGCYCviJI, CviTI627 127 125 93 28
TCGAEsaBC3I, TaqI, TthHB8I516 170 89 83 65 64 13
CACHindI212 133 94 80 77 54 47 45 32 28 28 24 20 17 16 14 14 10 9 8 8 6 6 6 4 3 3 2
AATTSse9I, TasI, Tsp509I, TspEI276 157 102 96 77 62 37 32 28 27 22 22 19 18 11 10 4
Polymorphic_strain_digestTTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI916 84
ACNGTBst4CI, HpyCH4III, TaaI, Tsp4CI966 34
RGCYCviJI, CviTI627 219 93 33 28
TCGAEsaBC3I, TaqI, TthHB8I516 170 129 89 83 13
CACHindI212 133 94 80 77 69 54 45 32 28 24 20 17 16 14 14 10 9 8 8 6 6 6 6 4 3 3 2
AATTSse9I, TasI, Tsp509I, TspEI276 157 102 96 77 62 37 32 28 27 22 22 18 11 10 10 9 4
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00031876
TranscriptCBG10497.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG10497.1:c.72-20C>A
Intron_number1/2
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP