WormBase Tree Display for Variation: WBVar00031844

WBVar00031844 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00031844
    Other_name: cbs25873
      cb25873 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.11938714T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4069d
    Flanking_sequences: aaagacacgaaaaatgatacaaaga gtaaatatgtgcaatttgttttaaa
    Mapping_target: cb25.fpc4069d
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GRCGYC AcyI, BsaHI, BstACI, Hin1I, Hsp92I 612 388
        ATCGAT BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI 885 115
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 696 239 47 18
        CAC HindI 141 128 87 85 83 74 50 46 42 37 33 30 30 28 21 18 18 15 10 9 5 4 4 2
        CGWCG Hpy99I 607 393
      Polymorphic_strain_digest: GRCGYC AcyI, BsaHI, BstACI, Hin1I, Hsp92I 612 270 118
        ATCGAT BanIII, Bsa29I, BscI, BseCI, BsiXI, Bsp106I, BspDI, BspXI, Bsu15I, BsuTUI, ClaI, ZhoI 1000
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 696 239 65
        CAC HindI 139 128 87 85 83 74 50 46 42 37 33 30 30 28 21 18 18 15 10 9 5 4 4 2 2
        CGWCG Hpy99I 607 273 120
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00037185
    Transcript: CBG17610.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG17610.1:c.*36A>C
        cDNA_position: 930
        Exon_number: 7/7
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP