WormBase Tree Display for Variation: WBVar00032019

WBVar00032019 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00032019
    Other_name: cbs25920
      cb25920 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.11462072T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4069d
    Flanking_sequences: agctcttaaaacagtttctggcgga aaccttcagcttttcttgagaacca
    Mapping_target: cb25.fpc4069d
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GGCC BshFI, BshI, BsuRI, HaeIII, PalI 1000
        GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 808 192
        YGGCCR CfrI, EaeI 1000
        RGCY CviJI, CviTI 278 199 153 85 67 50 41 35 33 25 21 8 5
        GCSGC TauI 1000
      Polymorphic_strain_digest: GGCC BshFI, BshI, BsuRI, HaeIII, PalI 501 499
        GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 504 304 192
        YGGCCR CfrI, EaeI 501 499
        RGCY CviJI, CviTI 278 199 153 85 67 50 41 35 25 22 21 11 8 5
        GCSGC TauI 504 496
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00037294
    Transcript: CBG17743.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG17743.1:c.135+4A>G
        Intron_number: 2/6
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP