WormBase Tree Display for Variation: WBVar00035144
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| WBVar00035144 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00035144 | ||||
| Other_name | cbs27258 | |||||
| cb27258 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | atttcctttttttttgaaacatcaa | ttcaaaaactggagaatttctagcc | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | T | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 123 107 76 63 63 60 52 49 43 36 33 25 24 24 24 21 16 16 16 16 16 15 14 12 9 8 8 8 8 8 7 | ||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 415 312 181 92 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 399 219 121 92 92 60 17 | ||||
| TCNNGA | Hpy178III, Hpy188III | 382 219 137 125 84 28 25 | ||||
| TCNGA | Hpy188I | 209 93 86 61 56 51 44 40 39 36 29 25 24 24 24 18 16 16 16 14 14 10 8 8 8 8 8 8 7 | ||||
| TTAA | MseI, Tru1I, Tru9I | 300 180 124 93 87 42 41 36 34 32 15 8 8 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 76 63 60 59 53 48 46 43 36 33 33 32 28 25 24 24 24 23 21 17 16 16 16 16 16 16 15 15 14 12 9 8 8 8 8 8 8 8 8 7 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 123 107 76 63 63 60 52 49 43 41 36 33 24 24 24 21 16 16 16 16 15 14 12 9 8 8 8 8 8 7 | |||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 596 312 92 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 520 219 92 92 60 17 | ||||
| TCNNGA | Hpy178III, Hpy188III | 303 142 137 125 84 79 77 28 25 | ||||
| TCNGA | Hpy188I | 227 137 93 61 56 44 40 39 36 29 25 24 24 24 18 16 16 16 14 14 8 8 8 8 8 7 | ||||
| TTAA | MseI, Tru1I, Tru9I | 342 180 124 93 87 41 36 34 32 15 8 8 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 76 63 60 59 53 48 46 43 36 33 33 32 28 24 24 24 24 23 21 17 17 16 16 16 16 16 15 15 14 12 9 8 8 8 8 8 8 8 8 7 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
