WormBase Tree Display for Variation: WBVar00035154
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| WBVar00035154 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00035154 | ||||
| Other_name | cbs27260 | |||||
| cb27260 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | tcattaaacttttgagtaattcgtt | cagaagcttttgacaattttaaata | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 216 123 90 76 68 52 47 43 35 25 24 24 24 21 16 16 16 16 12 9 8 8 8 8 8 7 | ||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 670 181 92 57 | ||||
| CTRYAG | BfmI, BstSFI, SfcI, SfeI | 1000 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 731 269 | ||||
| GAATTC | EcoRI, FunII | 323 284 256 137 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 346 231 121 92 92 60 58 | ||||
| TCNNGA | Hpy178III, Hpy188III | 548 177 137 84 29 25 | ||||
| TCNGA | Hpy188I | 277 99 93 86 61 56 51 44 42 36 29 24 16 16 16 14 8 8 8 8 8 | ||||
| CAYNNNNRTG | MslI, SmiMI | 729 271 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 128 81 76 68 53 46 44 43 35 32 28 25 25 24 24 24 23 22 21 16 16 16 16 15 12 9 8 8 8 8 8 8 8 8 7 7 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 216 123 115 90 76 52 43 41 35 24 24 24 21 16 16 16 12 9 8 8 8 8 8 7 | |||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 670 238 92 | ||||
| CTRYAG | BfmI, BstSFI, SfcI, SfeI | 711 289 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 1000 | ||||
| GAATTC | EcoRI, FunII | 607 256 137 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 346 231 179 92 92 60 | ||||
| TCNNGA | Hpy178III, Hpy188III | 471 177 137 84 77 29 25 | ||||
| TCNGA | Hpy188I | 277 137 99 93 61 56 44 42 36 29 24 16 16 16 14 8 8 8 8 8 | ||||
| CAYNNNNRTG | MslI, SmiMI | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 128 93 81 76 53 46 44 43 35 32 28 24 24 24 24 23 22 21 17 16 16 16 15 12 9 8 8 8 8 8 8 8 8 7 7 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
