WormBase Tree Display for Variation: WBVar00035169
expand all nodes | collapse all nodes | view schema
| WBVar00035169 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00035169 | ||||
| Other_name | cbs27263 | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | accagtcaacagcgcatcagttgaagataaagaacatgacgatgatagaa | tctataagttcatacgtaatacaattctatgaacctgtgaaataaatttc | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | T | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 434 123 90 68 52 47 43 38 24 21 16 12 9 8 8 7 | ||
| CTRYAG | BfmI, BstSFI, SfcI, SfeI | 1000 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 513 473 14 | ||||
| RGCY | CviJI, CviTI | 337 288 114 91 67 60 35 8 | ||||
| GAATTC | EcoRI, FunII | 502 323 137 38 | ||||
| TCNNGA | Hpy178III, Hpy188III | 548 247 137 43 25 | ||||
| TCNGA | Hpy188I | 277 152 86 86 79 61 51 44 36 29 29 16 16 14 8 8 8 | ||||
| GTNNAC | Hpy8I | 543 434 23 | ||||
| CAYNNNNRTG | MslI, SmiMI | 511 489 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 314 81 68 53 46 44 43 38 32 32 28 25 24 23 22 21 16 16 15 12 9 8 8 8 7 7 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 434 123 115 90 52 43 38 24 21 16 12 9 8 8 7 | |||
| CTRYAG | BfmI, BstSFI, SfcI, SfeI | 507 493 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 986 14 | ||||
| RGCY | CviJI, CviTI | 337 288 93 91 67 60 35 21 8 | ||||
| GAATTC | EcoRI, FunII | 825 137 38 | ||||
| TCNNGA | Hpy178III, Hpy188III | 471 247 137 77 43 25 | ||||
| TCNGA | Hpy188I | 277 152 137 86 79 61 44 36 29 29 16 16 14 8 8 8 | ||||
| GTNNAC | Hpy8I | 543 457 | ||||
| CAYNNNNRTG | MslI, SmiMI | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 314 93 81 53 46 44 43 38 32 32 28 24 23 22 21 16 16 15 12 9 8 8 8 7 7 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
