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WormBase Tree Display for Variation: WBVar00052963

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Name Class

WBVar00052963NamePublic_nameWBVar00052963
Other_namepas3758
haw41715
haw142336
cewivar00104682
Y55D5A.5c.1:c.2946C>G
Y55D5A.5a.1:c.2772-1013C>G
Y55D5A.5e.1:c.2544-1013C>G
Y55D5A.5f.1:c.342-1013C>G
Y55D5A.5d.1:c.2631-1013C>G
CE50204:p.Arg982=
HGVSgCHROMOSOME_III:g.3007050G>C
Sequence_detailsSMapS_parentSequenceY55D5A
Flanking_sequencesgaattccatgaattccaccaaggctcgccccaaaatctgacgtttttgcc
Mapping_targetY55D5A
Type_of_mutationSubstitutionGC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000034From_analysisMillion_mutation_project_reanalysis
WBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00004604From_analysisWGS_Pasadena_Quinlan
WBStrain00006625From_analysisMillion_mutation_project_reanalysis
WBStrain00006629From_analysisMillion_mutation_project_reanalysis
WBStrain00006631From_analysisMillion_mutation_project_reanalysis
WBStrain00006637From_analysisMillion_mutation_project_reanalysis
WBStrain00006640From_analysisMillion_mutation_project_reanalysis
WBStrain00006642From_analysisWGS_De_Bono
WBStrain00006643From_analysisMillion_mutation_project_reanalysis
WBStrain00006645From_analysisMillion_mutation_project_reanalysis
WBStrain00008273From_analysisMillion_mutation_project_reanalysis
WBStrain00022850From_analysisWGS_De_Bono
Million_mutation_project_reanalysis
WBStrain00022878From_analysisMillion_mutation_project_reanalysis
WBStrain00022887From_analysisMillion_mutation_project_reanalysis
WBStrain00022930From_analysisMillion_mutation_project_reanalysis
WBStrain00023018From_analysisMillion_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
WBStrain00023138From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00023191From_analysisMillion_mutation_project_reanalysis
WBStrain00023192From_analysisMillion_mutation_project_reanalysis
WBStrain00023665From_analysisMillion_mutation_project_reanalysis
WBStrain00024204From_analysisMillion_mutation_project_reanalysis
WBStrain00027647From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027652From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
WBStrain00031113From_analysisMillion_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
WBPerson6900
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
WGS_Pasadena_Quinlan
HistoryAcquires_mergeWBVar00562201
WBVar01260942
WBVar00098899
WBVar01329477
StatusLive
AffectsGeneWBGene00000898
TranscriptY55D5A.5e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5e.1:c.2544-1013C>G
Intron_number9/14
Y55D5A.5f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5f.1:c.342-1013C>G
Intron_number2/7
Y55D5A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5a.1:c.2772-1013C>G
Intron_number12/18
Y55D5A.5c.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY55D5A.5c.1:c.2946C>G
HGVSpCE50204:p.Arg982=
cDNA_position3109
CDS_position2946
Protein_position982
Exon_number14/21
Codon_changecgC/cgG
Amino_acid_changeR
Y55D5A.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5d.1:c.2631-1013C>G
Intron_number10/15
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw41715
MethodWGS_Hawaiian_Waterston