WormBase Tree Display for Variation: WBVar00057069
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| WBVar00057069 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00057069 | ||||
| Other_name | cbs39247 | |||||
| cb39247 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.13235754C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4126 | ||
| Flanking_sequences | aagattctccccggccgggaattgaacccgggtctcgcatgtgacagacgcggatactcaccactatactaccgaggaca | gatgtaatgaagaactagatgacat | ||||
| Mapping_target | cb25.fpc4126 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TTTAAA | AhaIII, DraI | 659 341 | ||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 574 426 | ||||
| YACGTR | BsaAI, BstBAI | 540 419 41 | ||||
| TCATGA | BspHI, PagI, RcaI | 931 47 22 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 497 301 133 46 23 | ||||
| CAC | HindI | 150 118 112 107 96 82 81 45 38 30 28 25 17 17 15 12 9 8 5 3 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 641 234 46 40 23 16 | ||||
| TTAA | MseI, Tru1I, Tru9I | 397 252 191 151 5 4 | ||||
| CAYNNNNRTG | MslI, SmiMI | 678 322 | ||||
| TTATAA | PsiI | 1000 | ||||
| Polymorphic_strain_digest | TTTAAA | AhaIII, DraI | 1000 | |||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| YACGTR | BsaAI, BstBAI | 540 460 | ||||
| TCATGA | BspHI, PagI, RcaI | 978 22 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 502 301 133 41 23 | ||||
| CAC | HindI | 150 112 110 107 96 82 70 48 45 38 30 28 25 17 15 9 8 5 3 2 | ||||
| TCNNGA | Hpy178III, Hpy188III | 641 234 62 40 23 | ||||
| TTAA | MseI, Tru1I, Tru9I | 4 | ||||
| CAYNNNNRTG | MslI, SmiMI | 493 322 185 | ||||
| TTATAA | PsiI | 658 342 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00038490 | ||||
| Transcript | CBG19234.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG19234.1:c.2047-117G>A | |||||
| Intron_number | 13/14 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
