WormBase Tree Display for Variation: WBVar00057099

WBVar00057099 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00057099
    Other_name: cbs39254
      cb39254 Paper_evidence: WBPaper00055507
    HGVSg: chrV:g.13349777A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4126
    Flanking_sequences: aatatacaggaatggtccaagtgac tatgacatcattcgaagagaaggag
    Mapping_target: cb25.fpc4126
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CATATG FauNDI, NdeI 500 401 99
        TCNNGA Hpy178III, Hpy188III 271 226 118 109 101 81 68 18 8
        ACGT HpyCH4IV, MaeII, TaiI, TscI 689 311
      Polymorphic_strain_digest: CATATG FauNDI, NdeI 599 401
        TCNNGA Hpy178III, Hpy188III 271 226 169 118 109 81 18 8
        ACGT HpyCH4IV, MaeII, TaiI, TscI 498 311 191
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00038509
    Transcript: CBG19253.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG19253.1:c.201A>G
        HGVSp: CBP32525.1:p.Thr67%3D
        cDNA_position: 201
        CDS_position: 201
        Protein_position: 67
        Exon_number: 3/7
        Codon_change: acA/acG
        Amino_acid_change: T
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP