WormBase Tree Display for Variation: WBVar00057234
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WBVar00057234 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00057234 | ||||
Other_name | cbs39287 | |||||
cb39287 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4126 | ||
Flanking_sequences | ttttattttccggtctgctgaattt | ttctttccctcccgtttccgtcttc | ||||
Mapping_target | cb25.fpc4126 | |||||
Type_of_mutation | Substitution | T | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | TTTAAA | AhaIII, DraI | 1000 | ||
TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 554 446 | ||||
CTNAG | BstDEI, DdeI | 647 301 52 | ||||
CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 530 280 93 82 15 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 555 445 | ||||
CAC | HindI | 104 94 83 79 76 56 53 52 52 45 44 40 38 33 31 25 23 20 12 10 9 7 7 5 2 | ||||
GTNAC | MaeIII | 713 187 83 17 | ||||
TTAA | MseI, Tru1I, Tru9I | 437 426 81 56 | ||||
GTSAC | NmuCI, Tsp45I | 730 187 83 | ||||
Polymorphic_strain_digest | TTTAAA | AhaIII, DraI | 990 10 | |||
TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 446 331 223 | ||||
CTNAG | BstDEI, DdeI | 455 301 192 52 | ||||
CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 530 373 82 15 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 445 332 223 | ||||
CAC | HindI | 104 94 83 79 76 56 54 53 52 45 44 40 38 33 31 25 23 20 12 10 9 7 7 5 | ||||
GTNAC | MaeIII | 713 270 17 | ||||
TTAA | MseI, Tru1I, Tru9I | 426 258 179 72 56 9 | ||||
GTSAC | NmuCI, Tsp45I | 730 270 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |