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WormBase Tree Display for Variation: WBVar00057234

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Name Class

WBVar00057234EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00057234
Other_namecbs39287
cb39287Paper_evidenceWBPaper00055507
Sequence_detailsSMapS_parentSequencecb25.fpc4126
Flanking_sequencesttttattttccggtctgctgaatttttctttccctcccgtttccgtcttc
Mapping_targetcb25.fpc4126
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestTTTAAAAhaIII, DraI1000
TTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI554 446
CTNAGBstDEI, DdeI647 301 52
CATGCviAII, FatI, HpyCH4I, Hsp92II, NlaIII530 280 93 82 15
TCGAEsaBC3I, TaqI, TthHB8I555 445
CACHindI104 94 83 79 76 56 53 52 52 45 44 40 38 33 31 25 23 20 12 10 9 7 7 5 2
GTNACMaeIII713 187 83 17
TTAAMseI, Tru1I, Tru9I437 426 81 56
GTSACNmuCI, Tsp45I730 187 83
Polymorphic_strain_digestTTTAAAAhaIII, DraI990 10
TTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI446 331 223
CTNAGBstDEI, DdeI455 301 192 52
CATGCviAII, FatI, HpyCH4I, Hsp92II, NlaIII530 373 82 15
TCGAEsaBC3I, TaqI, TthHB8I445 332 223
CACHindI104 94 83 79 76 56 54 53 52 45 44 40 38 33 31 25 23 20 12 10 9 7 7 5
GTNACMaeIII713 270 17
TTAAMseI, Tru1I, Tru9I426 258 179 72 56 9
GTSACNmuCI, Tsp45I730 270
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP