WormBase Tree Display for Variation: WBVar00059836
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WBVar00059836 | Evidence | Paper_evidence | WBPaper00040097 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00059836 | |||
Other_name | haw43089 | ||||
LSJ2_100 | |||||
cewivar00023207 | |||||
F54D8.2.2:c.136+17A>T | |||||
F54D8.2.1:c.136+17A>T | |||||
F54D8.2.4:c.136+17A>T | |||||
F54D8.2.3:c.136+17A>T | |||||
HGVSg | CHROMOSOME_III:g.5081887A>T | ||||
Sequence_details | SMap | S_parent | Sequence | F54D8 | |
Flanking_sequences | aagctcacagtaagtgttttttttt | aaataaatagtttctattttgatgt | |||
Mapping_target | F54D8 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (29) | |||||
Laboratory | RW | ||||
CX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_McGrath | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00601381 | |||
Status | Live | ||||
Affects | Gene | WBGene00006519 | |||
Transcript | F54D8.2.4 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F54D8.2.4:c.136+17A>T | ||||
Intron_number | 2/4 | ||||
F54D8.2.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54D8.2.2:c.136+17A>T | ||||
Intron_number | 2/4 | ||||
F54D8.2.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54D8.2.3:c.136+17A>T | ||||
Intron_number | 2/4 | ||||
F54D8.2.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F54D8.2.1:c.136+17A>T | ||||
Intron_number | 2/4 | ||||
Reference | WBPaper00040097 | ||||
Remark | [20081124 db] this Variation was previously named hw43089 | ||||
Method | WGS_Hawaiian_Waterston |