WormBase Tree Display for Variation: WBVar00064553

WBVar00064553 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00064553
    Other_name: cbs41166
      cb41166 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.1133633C>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0022b
    Flanking_sequences: attactttttcatgttttgcattat aaggatgttgcggaggtgggtttgg
    Mapping_target: cb25.fpc0022b
    Type_of_mutation: Substitution: C A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GTMKAC AccI, FblI, XmiI 917 83
        TTTAAA AhaIII, DraI 1000
        GGATCC BamHI 563 437
        CTAG BfaI, MaeI, XspI 545 307 70 46 14 9 9
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 673 327
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 565 251 143 41
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 673 327
        GCNNGC BstC8I, Cac8I 661 339
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 283 258 254 131 74
        TGCA CviRI, HpyCH4V 494 253 253
        CAC HindI 147 116 94 91 79 62 60 59 57 45 43 30 29 22 13 12 9 9 9 5 3 2 2 2
        TCNNGA Hpy178III, Hpy188III 430 288 219 26 23 14
        GTNNAC Hpy8I 719 199 82
        TTAA MseI, Tru1I, Tru9I 691 144 99 39 27
        TCCNGGA PfoI 675 325
        TTATAA PsiI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 257 170 169 138 53 52 33 30 25 18 15 12 11 9 8
      Polymorphic_strain_digest: GTMKAC AccI, FblI, XmiI 583 334 83
        TTTAAA AhaIII, DraI 575 251 174
        GGATCC BamHI 1000
        CTAG BfaI, MaeI, XspI 545 187 120 70 46 14 9 9
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 1000
        GGNNCC BscBI, BspLI, NlaIV, PspN4I 816 143 41
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 1000
        GCNNGC BstC8I, Cac8I 1000
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 283 254 211 131 74 47
        TGCA CviRI, HpyCH4V 747 253
        CAC HindI 147 116 94 91 79 62 60 59 57 45 43 30 29 22 14 13 9 9 9 5 3 2 2
        TCNNGA Hpy178III, Hpy188III 430 231 219 57 26 23 14
        GTNNAC Hpy8I 384 335 199 82
        TTAA MseI, Tru1I, Tru9I 267 251 173 144 99 39 27
        TCCNGGA PfoI 1000
        TTATAA PsiI 501 499
        AATT Sse9I, TasI, Tsp509I, TspEI 170 169 138 137 120 53 52 33 30 25 18 15 12 11 9 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00024177
    Transcript: CBG00847.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG00847.1:c.1866C>A
        HGVSp: CBP48157.1:p.Ile622%3D
        cDNA_position: 1866
        CDS_position: 1866
        Protein_position: 622
        Exon_number: 9/14
        Codon_change: atC/atA
        Amino_acid_change: I
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP