WormBase Tree Display for Variation: WBVar00064888
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| WBVar00064888 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00064888 | ||||
| Other_name | cbs41233 | |||||
| HGVSg | chrII:g.1052448T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | caatccataaatcggctgattattcgccgacgatccattcgatgagagcg | cgacgatggcatgtatcgtgacgatgtcgacgtggcagtggtgttcgata | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 753 247 | ||
| CCGC | AciI | 613 387 | ||||
| GCNNNNNNNGC | BstMWI, HpyF10VI, MwoI | 399 318 283 | ||||
| GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 611 389 | ||||
| CAC | HindI | 205 95 77 66 62 59 59 58 46 44 40 34 30 26 23 22 21 14 10 6 3 | ||||
| GTNNAC | Hpy8I | 528 239 136 74 23 | ||||
| CGWCG | Hpy99I | 400 272 209 68 30 21 | ||||
| GCSGC | TauI | 611 389 | ||||
| Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 753 231 16 | |||
| CCGC | AciI | 387 380 233 | ||||
| GCNNNNNNNGC | BstMWI, HpyF10VI, MwoI | 399 283 223 95 | ||||
| GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 500 389 111 | ||||
| CAC | HindI | 205 100 95 77 62 59 59 58 46 44 40 30 26 23 22 21 14 10 6 3 | ||||
| GTNNAC | Hpy8I | 528 375 74 23 | ||||
| CGWCG | Hpy99I | 400 272 209 68 27 24 | ||||
| GCSGC | TauI | 500 389 111 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024195 | ||||
| Transcript | CBG00870a.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG00870a.1:c.3055T>C | |||||
| HGVSp | CBP38315.1:p.Ser1019Pro | |||||
| cDNA_position | 3097 | |||||
| CDS_position | 3055 | |||||
| Protein_position | 1019 | |||||
| Exon_number | 15/19 | |||||
| Codon_change | Tcg/Ccg | |||||
| Amino_acid_change | S/P | |||||
| CBG00870b.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG00870b.1:c.2752T>C | |||||
| HGVSp | CBP45936.1:p.Ser918Pro | |||||
| cDNA_position | 2794 | |||||
| CDS_position | 2752 | |||||
| Protein_position | 918 | |||||
| Exon_number | 14/18 | |||||
| Codon_change | Tcg/Ccg | |||||
| Amino_acid_change | S/P | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
