WormBase Tree Display for Variation: WBVar00086106
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| WBVar00086106 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00086106 | |||
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_X:g.15127329T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | R07D5 | |
| Flanking_sequences | atttttggaattcattcaattttga | agttttttcttagtttggtagctat | |||
| Mapping_target | R07D5 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (180) | |||||
| Laboratory | RW | ||||
| QX | |||||
| Person | WBPerson1562 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01472786 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00006747 | |||
| Transcript | R07D5.1i.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1i.1:c.58-154A>T | ||||
| Intron_number | 2/11 | ||||
| R07D5.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1a.2:c.195+51A>T | ||||
| Intron_number | 2/11 | ||||
| R07D5.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1f.1:c.19-154A>T | ||||
| Intron_number | 1/9 | ||||
| R07D5.1h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1h.1:c.58-154A>T | ||||
| Intron_number | 1/9 | ||||
| R07D5.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1c.1:c.-165-154A>T | ||||
| Intron_number | 1/11 | ||||
| R07D5.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1a.1:c.195+51A>T | ||||
| Intron_number | 3/12 | ||||
| R07D5.1g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1g.1:c.19-154A>T | ||||
| Intron_number | 2/11 | ||||
| R07D5.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1d.1:c.268-154A>T | ||||
| Intron_number | 1/9 | ||||
| R07D5.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1e.1:c.268-154A>T | ||||
| Intron_number | 1/10 | ||||
| R07D5.1j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1j.1:c.195+51A>T | ||||
| Intron_number | 1/9 | ||||
| Reference | WBPaper00040707 | ||||
| Remark | [20081124 db] this Variation was previously named hw110466 | ||||
| Method | WGS_Hawaiian_Waterston |
