WormBase Tree Display for Variation: WBVar00087760
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WBVar00087760 | Evidence | Paper_evidence | WBPaper00024329 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | hc52 | |||||||
Other_name | hc52ts | ||||||||
C17D12.6a.1:c.1649G>A | |||||||||
CE42755:p.Gly269Glu | |||||||||
C17D12.6b.1:c.806G>A | |||||||||
CE27074:p.Gly550Glu | |||||||||
HGVSg | CHROMOSOME_I:g.11583193C>T | ||||||||
Sequence_details | SMap | S_parent | Sequence | C17D12 | |||||
Flanking_sequences | tcgttcttttcagctgtcaatgcgtcaatg | gacacgtggctcgttgtgtgagaatgtgga | |||||||
Mapping_target | C17D12 | ||||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00024329 | ||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00000379 | ||||||||
Laboratory | BA | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00004963 | |||||||
Transcript | C17D12.6a.1 (12) | ||||||||
C17D12.6b.1 (12) | |||||||||
Genetics | Interpolated_map_position | I | 9.26839 | ||||||
Mapping_data | In_multi_point | 3106 | |||||||
Description | Phenotype | WBPhenotype:0000357 | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00001075 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00001075 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 16C, 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000389 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Hermaphrodites grown at 25C produce motile sperm that are fertilization defective. Self-fertility < 1% (25C) 100% (16C). | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Ease_of_scoring | ES2_Difficult_to_score | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000693 | Person_evidence | WBPerson261 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Males grown at 25C produce motile sperm that are fertilization defective. | Person_evidence | WBPerson261 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | 25 | Person_evidence | WBPerson261 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000736 | Paper_evidence | WBPaper00040312 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | In spe-9(hc52ts) mutant eggs, the first induction of GFP-LGG-1-positive autophagosomes was not observed. | Paper_evidence | WBPaper00040312 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | Paper_evidence | WBPaper00040312 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001135 | Paper_evidence | WBPaper00040312 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Paternal mitochondria persisted. | Paper_evidence | WBPaper00040312 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | Paper_evidence | WBPaper00040312 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001360 | Paper_evidence | WBPaper00001075 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00001075 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00001075 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 16C, 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001375 | Paper_evidence | WBPaper00040312 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | In spe-9(hc52ts) mutant eggs, the first induction of GFP-LGG-1-positive autophagosomes was not observed. | Paper_evidence | WBPaper00040312 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature_sensitive | Heat_sensitive | Paper_evidence | WBPaper00040312 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001720 | Paper_evidence | WBPaper00001075 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Spermatozoa are slowly swept out of the spermatheca by passing oocytes | Paper_evidence | WBPaper00001075 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00001075 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00001075 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 16C, 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_not_observed | WBPhenotype:0000306 | Paper_evidence | WBPaper00027612 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | CAV-1::GFP degradation had normal kinetics in unfertilized eggs. Authors report identical results with CAV-2::GFP. | Paper_evidence | WBPaper00027612 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Treatment | L4 hermaphrodites were incubated at 25C for 24 hr then examined under fluorescence. | Paper_evidence | WBPaper00027612 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature | 25C | Paper_evidence | WBPaper00027612 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Genotype | pwIs281 | Paper_evidence | WBPaper00027612 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000390 | Paper_evidence | WBPaper00001075 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Adults produce large numbers of spermatids that activate in vitro after pronase treatment to form spermatozoa that are cytologically indistinguishable from wild type | Paper_evidence | WBPaper00001075 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Recessive | Paper_evidence | WBPaper00001075 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000041 | PATO:0000460 | Paper_evidence | WBPaper00001075 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Temperature_sensitive | Heat_sensitive | 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Temperature | 16C, 25C | Paper_evidence | WBPaper00001075 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001323 | Paper_evidence | WBPaper00027612 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | CAV-1 body formation normal in oocytes as assayed by CAV-1::GFP fluorescence. Authors report identical results with CAV-2::GFP. | Paper_evidence | WBPaper00027612 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006797 | PATO:0000460 | Paper_evidence | WBPaper00027612 | ||||
Curator_confirmed | WBPerson712 | ||||||||
Phenotype_assay | Treatment | L4 hermaphrodites were incubated at 25C for 24 hr then examined under fluorescence. | Paper_evidence | WBPaper00027612 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Temperature | 25C | Paper_evidence | WBPaper00027612 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Genotype | pwIs281 | Paper_evidence | WBPaper00027612 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Reference | WBPaper00040312 | ||||||||
WBPaper00027612 | |||||||||
WBPaper00001075 | |||||||||
Method | Substitution_allele |