WormBase Tree Display for Variation: WBVar00089522
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WBVar00089522 | Evidence | Paper_evidence | WBPaper00005609 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | n475 | |||||||
Other_name | CE28339:p.Lys34Ter | ||||||||
F55A8.1b.1:c.100A>T | |||||||||
CE48960:p.Lys34Ter | |||||||||
F55A8.1a.2:c.100A>T | |||||||||
F55A8.1a.1:c.100A>T | |||||||||
HGVSg | CHROMOSOME_IV:g.1913571A>T | ||||||||
Sequence_details | SMap | S_parent | Sequence | F55A8 | |||||
Flanking_sequences | aggccgtcagatgagccgtgtagtggttgc | aacagttacagaaggatgttgcaaaggtaa | |||||||
Mapping_target | F55A8 | ||||||||
Type_of_mutation | Substitution | a | t | ||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00026869 | ||||||||
Laboratory | MT | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00305452 | |||||||
WBGene00001186 | |||||||||
Transcript | F55A8.1b.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | ||||||||
HGVSc | F55A8.1b.1:c.100A>T | ||||||||
HGVSp | CE48960:p.Lys34Ter | ||||||||
cDNA_position | 126 | ||||||||
CDS_position | 100 | ||||||||
Protein_position | 34 | ||||||||
Exon_number | 2/6 | ||||||||
Codon_change | Aaa/Taa | ||||||||
Amino_acid_change | K/* | ||||||||
F55A8.7 | |||||||||
F55A8.1a.2 | VEP_consequence | stop_gained | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F55A8.1a.2:c.100A>T | ||||||||
HGVSp | CE28339:p.Lys34Ter | ||||||||
cDNA_position | 158 | ||||||||
CDS_position | 100 | ||||||||
Protein_position | 34 | ||||||||
Exon_number | 3/7 | ||||||||
Codon_change | Aaa/Taa | ||||||||
Amino_acid_change | K/* | ||||||||
F55A8.1a.1 | VEP_consequence | stop_gained | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | F55A8.1a.1:c.100A>T | ||||||||
HGVSp | CE28339:p.Lys34Ter | ||||||||
cDNA_position | 118 | ||||||||
CDS_position | 100 | ||||||||
Protein_position | 34 | ||||||||
Exon_number | 2/6 | ||||||||
Codon_change | Aaa/Taa | ||||||||
Amino_acid_change | K/* | ||||||||
Interactor | WBInteraction000501041 | ||||||||
Genetics | Interpolated_map_position | IV | -13.212 | ||||||
Description | Phenotype (13) | ||||||||
Phenotype_not_observed | WBPhenotype:0000414 | Paper_evidence | WBPaper00004408 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | Animals do not exhibit two large P11.p-like hypodermal nuclei immediately anterior to the anus, indicating a P12 to P11 cell-fate transformation (Table 3) | Paper_evidence | WBPaper00004408 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006899 | PATO:0000460 | Paper_evidence | WBPaper00004408 | ||||
Curator_confirmed | WBPerson2987 | ||||||||
WBbt:0006900 | PATO:0000460 | Paper_evidence | WBPaper00004408 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Reference | WBPaper00004408 | ||||||||
WBPaper00000635 | |||||||||
WBPaper00001105 | |||||||||
WBPaper00005609 | |||||||||
WBPaper00017602 | |||||||||
Method | Substitution_allele |