WormBase Tree Display for Variation: WBVar00090303

WBVar00090303 Name: Public_name: n1939
    Other_name: T01C4.2c.1:c.110G>A
      CE28350:p.Trp37Ter
    HGVSg: CHROMOSOME_V:g.7103806G>A
  Sequence_details: SMap: S_parent: Sequence: T01C4
    Flanking_sequences: cggcacgtgaaagatcgaatacagaatatt gaaagatcagcatccacaacaaagatggag
    Mapping_target: T01C4
    Type_of_mutation: Substitution: g a
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00003849
    Transcript: T01C4.2c.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: T01C4.2c.1:c.110G>A
        HGVSp: CE28350:p.Trp37Ter
        cDNA_position: 215
        CDS_position: 110
        Protein_position: 37
        Exon_number: 3/8
        Codon_change: tGg/tAg
        Amino_acid_change: W/*
  Genetics: Interpolated_map_position: V 0.586803
    Mapping_data: In_multi_point: 2049
      In_pos_neg_data: 5974
        5978
        5981
  Description: Phenotype: WBPhenotype:0000302 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00001786
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: Benzaldehyde dilutions range from 1:10 to 1:1000 Paper_evidence: WBPaper00001786
              Curator_confirmed: WBPerson2021
      WBPhenotype:0000304 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00001786
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: Isoamyl alcohol dilutions range from 1:10 to 1:1000 Paper_evidence: WBPaper00001786
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001048 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: Defective chemotaxis to some volatile odorants. n1939/Df similar. Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000303 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00001786
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: Diacetyl dilutions range from 1:10 to 1:1000 Paper_evidence: WBPaper00001786
              Curator_confirmed: WBPerson2021
      WBPhenotype:0000315 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000480 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        Affected_by: Molecule: WBMol:00005360 Paper_evidence: WBPaper00001786
              Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00001786
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: Pyrazine dilutions range from 1:10 to 1:1000 Paper_evidence: WBPaper00001786
              Curator_confirmed: WBPerson2021
      WBPhenotype:0000643 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000688 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001085 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00001786
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: 2-butanone dilutions range from 1:10 to 1:1000 Paper_evidence: WBPaper00001786
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001086 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00001786
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: Trimethylthiazole dilutions range from 1:10 to 1:1000 Paper_evidence: WBPaper00001786
              Curator_confirmed: WBPerson2021
      WBPhenotype:0001248 Paper_evidence: WBPaper00001786
        Curator_confirmed: WBPerson2021
        Remark: No morphological defects in the AWC cilia Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00001786
            Curator_confirmed: WBPerson2021
        EQ_annotations: Life_stage: WBls:0000041 PATO:0000460 Paper_evidence: WBPaper00001786
                Curator_confirmed: WBPerson2021
  Reference: WBPaper00001786
    WBPaper00021697
  Remark: Corresponding predicted gene has also been called T01C4.2b Paper_evidence: WBPaper00004498
  Method: Substitution_allele