WormBase Tree Display for Variation: WBVar00090819
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| WBVar00090819 | Evidence | Paper_evidence | WBPaper00027681 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | n4293 | |||||
| HGVSg | CHROMOSOME_II:g.14390440_14391164del | ||||||
| Sequence_details | SMap | S_parent | Sequence | F26H11 | |||
| Flanking_sequences | atcccattatcgattttttcagcttcaaaa | cgtcgttcacaacaaattatttagatttaa | |||||
| Mapping_target | F26H11 | ||||||
| Type_of_mutation | Deletion | ||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00027440 | ||||||
| Laboratory | MT | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00009180 | |||||
| Transcript | F26H11.2k.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| Intron_number | 2/17 | ||||||
| Exon_number | 1-2/18 | ||||||
| F26H11.2q.2 | VEP_consequence | splice_donor_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1/17 | ||||||
| Exon_number | 1/18 | ||||||
| F26H11.2s.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 2/26 | ||||||
| Exon_number | 1-2/27 | ||||||
| F26H11.2d.2 | VEP_consequence | splice_donor_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1/26 | ||||||
| Exon_number | 1/27 | ||||||
| F26H11.2i.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 2/17 | ||||||
| Exon_number | 1-2/18 | ||||||
| F26H11.2b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 2/17 | ||||||
| Exon_number | 1-2/18 | ||||||
| F26H11.2a.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 2/26 | ||||||
| Exon_number | 1-2/27 | ||||||
| F26H11.2q.3 | VEP_consequence | splice_donor_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1/16 | ||||||
| Exon_number | 1/17 | ||||||
| F26H11.2c.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 2/26 | ||||||
| Exon_number | 1-2/27 | ||||||
| F26H11.2n.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1/24 | ||||||
| Exon_number | 1/25 | ||||||
| Isolation | Mutagen | EMS | Paper_evidence | WBPaper00027681 | |||
| Genetics | Interpolated_map_position | II | 22.9627 | ||||
| Description | Phenotype | WBPhenotype:0000688 | Person_evidence | WBPerson566 | |||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | Suppresses synMuv. Specifically affects the nurf-1a isoform, not the isoforms b through e. Described in Andersen, Lu, and Horvitz (WBPaper00027681). | Person_evidence | WBPerson566 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Recessive | Person_evidence | WBPerson566 | |||||
| Curator_confirmed | WBPerson712 | ||||||
| Variation_effect | Null | Person_evidence | WBPerson566 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference | WBPaper00027681 | ||||||
| Method | Deletion_allele |
