WormBase Tree Display for Variation: WBVar00090873

WBVar00090873 Evidence: Paper_evidence: WBPaper00031335
  Name: Public_name: n4594
    Other_name: B0034.4.1:c.-451_357del
      B0034.1.1:c.-36_-8-635del
    HGVSg: CHROMOSOME_II:g.5968476_5969468del
  Sequence_details: SMap: S_parent: Sequence: B0034
    Flanking_sequences: TTTTCGAATTGGCTTATG ATACAATAGGTGTAAAATGGC
    Mapping_target: B0034
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00027491
    Laboratory: MT
    Status: Live
  Affects: Gene: WBGene00015002
      WBGene00003355
      WBGene00015004
    Transcript: B0034.6
      B0034.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0034.4.1:c.-451_357del
        cDNA_position: 64-871
        CDS_position: ?-357
        Protein_position: ?-119
        Intron_number: 1-5/7
        Exon_number: 1-6/8
      B0034.1.1 VEP_consequence: splice_donor_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0034.1.1:c.-36_-8-635del
        cDNA_position: 140-?
        Intron_number: 1/7
        Exon_number: 1/8
  Isolation: Mutagen: EMS Paper_evidence: WBPaper00031335
  Genetics: Interpolated_map_position: II -0.778149
  Description: Phenotype_not_observed: WBPhenotype:0000006 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Egl Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000207 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Defecation cycle is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000634 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Pumping is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000637 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: No defects in dauer formation Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000643 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Unc Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001233 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Cell number and nuclear staining is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DAPI staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002535 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Dyf Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        EQ_annotations: Anatomy_term: WBbt:0005666 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005667 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005668 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005665 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005661 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007807 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007808 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiO staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
  Reference: WBPaper00031335
  Method: Deletion_allele