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WormBase Tree Display for Variation: WBVar00090901

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Name Class

WBVar00090901EvidencePaper_evidenceWBPaper00031335
NamePublic_namen4899
Other_nameEGAP1.3.1:c.332+557_332+1082del
HGVSgCHROMOSOME_III:g.5931175_5931700del
Sequence_detailsSMapS_parentSequenceEGAP1
Flanking_sequencesGGGTGCCTAATGCAAAAGTAGCAGAAGGACCA
Mapping_targetEGAP1
Type_of_mutationDeletion
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00023469
WBStrain00023471
WBStrain00027537
LaboratoryMT
StatusLive
AffectsGeneWBGene00197245
WBGene00003295
WBGene00006987
TranscriptEGAP1.4VEP_consequencetranscript_ablation
VEP_impactHIGH
Exon_number1/1
EGAP1.2
EGAP1.3.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScEGAP1.3.1:c.332+557_332+1082del
Intron_number4/9
IsolationMutagenUV-TMPPaper_evidenceWBPaper00031335
GeneticsInterpolated_map_positionIII-1.4317
DescriptionPhenotype_not_observedWBPhenotype:0000006Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Remarknon-EglPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000207Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkDefecation cycle is normalPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000634Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkPumping is normalPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000637Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkNo defects in dauer formationPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0000643Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Remarknon-UncPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0001233Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
RemarkCell number and nuclear staining is normalPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentDAPI stainingPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBPhenotype:0002535Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Remarknon-DyfPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
EQ_annotationsAnatomy_termWBbt:0005666PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005667PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005668PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005665PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0005661PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0007807PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
WBbt:0007808PATO:0000460Paper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentDiO stainingPaper_evidenceWBPaper00031335
Curator_confirmedWBPerson2021
ReferenceWBPaper00031335
MethodDeletion_allele